V4LVW4_EUTSA protein (Eutrema salsugineum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4LVW4_EUTSA

Polysacc_synt_4 domain-containing protein. (316 aa)

Predicted Functional Partners:

V4KP09_EUTSA

0.592

V4LYK6_EUTSA

0.475

V4MR90_EUTSA

0.453

V4KLK8_EUTSA

0.448

V4N373_EUTSA

0.446

V4M598_EUTSA

0.445

V4L897_EUTSA

0.442

V4K0D1_EUTSA

0.436

V4MA45_EUTSA

0.431

V4KQX6_EUTSA

0.430

Your Current Organism:

Eutrema salsugineum

NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4K0D1_EUTSA	V4KLK8_EUTSA	V4K0D1	V4KLK8	Uncharacterized protein.	Uncharacterized protein.	0.442
V4K0D1_EUTSA	V4KQX6_EUTSA	V4K0D1	V4KQX6	Uncharacterized protein.	Uncharacterized protein.	0.411
V4K0D1_EUTSA	V4L897_EUTSA	V4K0D1	V4L897	Uncharacterized protein.	PH domain-containing protein.	0.478
V4K0D1_EUTSA	V4LVW4_EUTSA	V4K0D1	V4LVW4	Uncharacterized protein.	Polysacc_synt_4 domain-containing protein.	0.436
V4K0D1_EUTSA	V4LYK6_EUTSA	V4K0D1	V4LYK6	Uncharacterized protein.	PH domain-containing protein.	0.456
V4K0D1_EUTSA	V4M598_EUTSA	V4K0D1	V4M598	Uncharacterized protein.	Uncharacterized protein.	0.529
V4K0D1_EUTSA	V4MA45_EUTSA	V4K0D1	V4MA45	Uncharacterized protein.	Uncharacterized protein.	0.514
V4K0D1_EUTSA	V4MR90_EUTSA	V4K0D1	V4MR90	Uncharacterized protein.	PH domain-containing protein.	0.487
V4KLK8_EUTSA	V4K0D1_EUTSA	V4KLK8	V4K0D1	Uncharacterized protein.	Uncharacterized protein.	0.442
V4KLK8_EUTSA	V4KQX6_EUTSA	V4KLK8	V4KQX6	Uncharacterized protein.	Uncharacterized protein.	0.413
V4KLK8_EUTSA	V4LVW4_EUTSA	V4KLK8	V4LVW4	Uncharacterized protein.	Polysacc_synt_4 domain-containing protein.	0.448
V4KLK8_EUTSA	V4M598_EUTSA	V4KLK8	V4M598	Uncharacterized protein.	Uncharacterized protein.	0.417
V4KLK8_EUTSA	V4MA45_EUTSA	V4KLK8	V4MA45	Uncharacterized protein.	Uncharacterized protein.	0.457
V4KP09_EUTSA	V4LVW4_EUTSA	V4KP09	V4LVW4	Uncharacterized protein.	Polysacc_synt_4 domain-containing protein.	0.592
V4KQX6_EUTSA	V4K0D1_EUTSA	V4KQX6	V4K0D1	Uncharacterized protein.	Uncharacterized protein.	0.411
V4KQX6_EUTSA	V4KLK8_EUTSA	V4KQX6	V4KLK8	Uncharacterized protein.	Uncharacterized protein.	0.413
V4KQX6_EUTSA	V4L897_EUTSA	V4KQX6	V4L897	Uncharacterized protein.	PH domain-containing protein.	0.417
V4KQX6_EUTSA	V4LVW4_EUTSA	V4KQX6	V4LVW4	Uncharacterized protein.	Polysacc_synt_4 domain-containing protein.	0.430
V4KQX6_EUTSA	V4M598_EUTSA	V4KQX6	V4M598	Uncharacterized protein.	Uncharacterized protein.	0.491
V4KQX6_EUTSA	V4MA45_EUTSA	V4KQX6	V4MA45	Uncharacterized protein.	Uncharacterized protein.	0.452

page 1 of 4

Server load: low (12%) [HD]

Permalink

Network

Cooccurrence

Experiments

Neighborhood

Textmining

Fusion

Databases

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About