STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4M2T8_EUTSAUBIQUITIN_CONJUGAT_2 domain-containing protein. (178 aa)    
Predicted Functional Partners:
V4L977_EUTSA
HECT domain-containing protein.
    
 0.785
V4LRA0_EUTSA
HECT domain-containing protein.
    
 0.784
V4N6R1_EUTSA
Uncharacterized protein.
    
 0.620
V4LK25_EUTSA
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
    
 
 0.517
V4L0J2_EUTSA
Uncharacterized protein.
    
 0.510
V4L4B2_EUTSA
Uncharacterized protein.
    
 0.510
V4K3V9_EUTSA
RING-type domain-containing protein.
    
 0.493
V4MQS4_EUTSA
OTU domain-containing protein.
    
 0.473
V4MQ60_EUTSA
WD_REPEATS_REGION domain-containing protein.
    
 0.465
V4LYD5_EUTSA
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
  
 
 0.459
Your Current Organism:
Eutrema salsugineum
NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress
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