V4M9V1_EUTSA protein (Eutrema salsugineum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4M9V1_EUTSA

Importin N-terminal domain-containing protein. (1010 aa)

Predicted Functional Partners:

V4KVN3_EUTSA

0.628

V4LGR9_EUTSA

0.628

V4KSH9_EUTSA

0.608

V4K196_EUTSA

0.603

V4LJT8_EUTSA

0.597

V4KVX2_EUTSA

0.594

V4MS00_EUTSA

0.584

V4MG53_EUTSA

0.581

V4MTV6_EUTSA

0.575

V4K7F5_EUTSA

0.567

Your Current Organism:

Eutrema salsugineum

NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4K196_EUTSA	V4KSH9_EUTSA	V4K196	V4KSH9	Importin N-terminal domain-containing protein.	Uncharacterized protein.	0.606
V4K196_EUTSA	V4KVN3_EUTSA	V4K196	V4KVN3	Importin N-terminal domain-containing protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.897
V4K196_EUTSA	V4LGR9_EUTSA	V4K196	V4LGR9	Importin N-terminal domain-containing protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.897
V4K196_EUTSA	V4LJT8_EUTSA	V4K196	V4LJT8	Importin N-terminal domain-containing protein.	Importin N-terminal domain-containing protein.	0.649
V4K196_EUTSA	V4M9V1_EUTSA	V4K196	V4M9V1	Importin N-terminal domain-containing protein.	Importin N-terminal domain-containing protein.	0.603
V4K7F5_EUTSA	V4M9V1_EUTSA	V4K7F5	V4M9V1	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.567
V4K7F5_EUTSA	V4MS00_EUTSA	V4K7F5	V4MS00	Uncharacterized protein.	Uncharacterized protein.	0.900
V4KSH9_EUTSA	V4K196_EUTSA	V4KSH9	V4K196	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.606
V4KSH9_EUTSA	V4KVN3_EUTSA	V4KSH9	V4KVN3	Uncharacterized protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.740
V4KSH9_EUTSA	V4LGR9_EUTSA	V4KSH9	V4LGR9	Uncharacterized protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.740
V4KSH9_EUTSA	V4LJT8_EUTSA	V4KSH9	V4LJT8	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.647
V4KSH9_EUTSA	V4M9V1_EUTSA	V4KSH9	V4M9V1	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.608
V4KVN3_EUTSA	V4K196_EUTSA	V4KVN3	V4K196	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Importin N-terminal domain-containing protein.	0.897
V4KVN3_EUTSA	V4KSH9_EUTSA	V4KVN3	V4KSH9	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Uncharacterized protein.	0.740
V4KVN3_EUTSA	V4LGR9_EUTSA	V4KVN3	V4LGR9	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.900
V4KVN3_EUTSA	V4LJT8_EUTSA	V4KVN3	V4LJT8	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Importin N-terminal domain-containing protein.	0.958
V4KVN3_EUTSA	V4M9V1_EUTSA	V4KVN3	V4M9V1	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Importin N-terminal domain-containing protein.	0.628
V4KVX2_EUTSA	V4M9V1_EUTSA	V4KVX2	V4M9V1	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Importin N-terminal domain-containing protein.	0.594
V4LGR9_EUTSA	V4K196_EUTSA	V4LGR9	V4K196	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Importin N-terminal domain-containing protein.	0.897
V4LGR9_EUTSA	V4KSH9_EUTSA	V4LGR9	V4KSH9	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Uncharacterized protein.	0.740

page 1 of 3

Server load: low (16%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About