STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4MJ21_EUTSAHistone H2A; Belongs to the histone H2A family. (136 aa)    
Predicted Functional Partners:
V4LY07_EUTSA
Uncharacterized protein.
    
 0.949
V4MGE4_EUTSA
RRM domain-containing protein.
   
 0.938
V4N9D3_EUTSA
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
 0.938
V4NZ96_EUTSA
YL1_C domain-containing protein.
    
 
 0.937
V4N8Y1_EUTSA
RuvB-like helicase; Belongs to the RuvB family.
   
 0.927
V4N9T6_EUTSA
HIT-type domain-containing protein.
    
 
 0.920
V4N2E9_EUTSA
SANT domain-containing protein.
    
 
 0.909
V4JWQ7_EUTSA
Uncharacterized protein.
   
 0.867
V4KJV3_EUTSA
Uncharacterized protein.
   
 0.867
V4KYH3_EUTSA
Uncharacterized protein.
   
 0.867
Your Current Organism:
Eutrema salsugineum
NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.