STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4P8X0_EUTSAUncharacterized protein. (1461 aa)    
Predicted Functional Partners:
V4K4B0_EUTSA
Uncharacterized protein.
  
 0.997
V4KMV7_EUTSA
Uncharacterized protein.
  
 
 0.992
V4KTM0_EUTSA
Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
    
 0.945
V4L6Y2_EUTSA
MPN domain-containing protein.
    
 0.898
V4L3U7_EUTSA
Ubiquitin-like domain-containing protein.
    
  0.873
V4LVC5_EUTSA
Ubiquitin-like domain-containing protein.
    
  0.873
V4N2E1_EUTSA
Ubiquitin-like domain-containing protein.
    
  0.873
V4NLV7_EUTSA
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 0.858
V4LXP6_EUTSA
Ubiquitin-like domain-containing protein.
    
  0.842
V4MAT1_EUTSA
Ubiquitin-like domain-containing protein.
    
  0.842
Your Current Organism:
Eutrema salsugineum
NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress
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