STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytkDPutative 8-oxo-dGTP diphosphatase YtkD; Belongs to the Nudix hydrolase family. (157 aa)    
Predicted Functional Partners:
AKL92210.1
Prolyl oligopeptidase family protein.
       0.871
AKL92212.1
Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
       0.810
AKL92169.1
Hypothetical protein; Belongs to the UPF0354 family.
  
     0.772
AKL91410.1
Hypothetical protein.
  
     0.739
mecA
Adapter protein MecA; Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis.
  
     0.723
AKL91750.1
Hypothetical protein; Belongs to the UPF0342 family.
  
     0.706
AKL92252.1
Hypothetical protein.
 
     0.695
cshB
DEAD-box ATP-dependent RNA helicase CshB; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures.
  
 0.680
cshA
Putative DEAD-box ATP-dependent RNA helicase; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily.
  
 0.680
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
    
 0.648
Your Current Organism:
Staphylococcus capitis
NCBI taxonomy Id: 72758
Other names: S. capitis subsp. capitis, Staphylococcus capitis subsp. capitis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.