STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC13134.1Predicted arabinose efflux permease, MFS family. (417 aa)    
Predicted Functional Partners:
SFC13067.1
Rieske 2Fe-2S family protein.
    
  0.759
SFC13105.1
Ferredoxin-NADP reductase.
     
 0.743
SFC13160.1
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
       0.697
SFC13038.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
 
     0.579
SFC08443.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.469
SFB96453.1
Para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase.
   
 
  0.405
Your Current Organism:
Devosia psychrophila
NCBI taxonomy Id: 728005
Other names: CGMCC 1.10210, CIP 110130, D. psychrophila, DSM 22950, Devosia psychrophila Zhang et al. 2012, Devosia sp. Cr7-05, strain Cr7-05
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