STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC75073.1Uncharacterized membrane protein YckC, RDD family. (169 aa)    
Predicted Functional Partners:
SFC56989.1
Apolipoprotein A1/A4/E domain-containing protein.
 
     0.753
SFC30240.1
Hypothetical protein.
  
     0.743
SFD19998.1
Ribosome-associated heat shock protein Hsp15.
   
    0.730
SFC42076.1
Hypothetical protein.
  
     0.716
SFD03716.1
Protein of unknown function.
 
    0.688
SFD12702.1
Hypothetical protein.
  
     0.686
SFC29409.1
Hypothetical protein.
  
     0.666
SFD24277.1
Predicted transglutaminase-like cysteine proteinase.
  
     0.662
SFD05966.1
TIGR02301 family protein.
  
     0.659
SFD12473.1
Flagellar export protein FliJ.
  
     0.657
Your Current Organism:
Devosia psychrophila
NCBI taxonomy Id: 728005
Other names: CGMCC 1.10210, CIP 110130, D. psychrophila, DSM 22950, Devosia psychrophila Zhang et al. 2012, Devosia sp. Cr7-05, strain Cr7-05
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.