Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000819825_01326 | gltA | GCA_000819825_01326 | GCA_000819825_02552 | Unannotated protein. | Unannotated protein; Belongs to the citrate synthase family. | 0.873 |
GCA_000819825_01326 | icd_1 | GCA_000819825_01326 | GCA_000819825_02825 | Unannotated protein. | Unannotated protein. | 0.872 |
GCA_000819825_01326 | leuC_1 | GCA_000819825_01326 | GCA_000819825_01327 | Unannotated protein. | Unannotated protein. | 0.779 |
GCA_000819825_01326 | mii | GCA_000819825_01326 | GCA_000819825_01328 | Unannotated protein. | Unannotated protein. | 0.983 |
GCA_000819825_01326 | nuoC | GCA_000819825_01326 | GCA_000819825_01209 | Unannotated protein. | Unannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family. | 0.814 |
GCA_000819825_01326 | prpB | GCA_000819825_01326 | GCA_000819825_01324 | Unannotated protein. | Unannotated protein; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family. | 0.857 |
GCA_000819825_01326 | prpC | GCA_000819825_01326 | GCA_000819825_01325 | Unannotated protein. | Unannotated protein; Belongs to the citrate synthase family. | 0.989 |
GCA_000819825_01326 | rplB | GCA_000819825_01326 | GCA_000819825_01739 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.774 |
GCA_000819825_01326 | rplE | GCA_000819825_01326 | GCA_000819825_01730 | Unannotated protein. | Unannotated protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.779 |
GCA_000819825_01326 | rpsH | GCA_000819825_01326 | GCA_000819825_01728 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.775 |
gltA | GCA_000819825_01326 | GCA_000819825_02552 | GCA_000819825_01326 | Unannotated protein; Belongs to the citrate synthase family. | Unannotated protein. | 0.873 |
gltA | icd_1 | GCA_000819825_02552 | GCA_000819825_02825 | Unannotated protein; Belongs to the citrate synthase family. | Unannotated protein. | 0.899 |
gltA | leuC_1 | GCA_000819825_02552 | GCA_000819825_01327 | Unannotated protein; Belongs to the citrate synthase family. | Unannotated protein. | 0.898 |
gltA | mii | GCA_000819825_02552 | GCA_000819825_01328 | Unannotated protein; Belongs to the citrate synthase family. | Unannotated protein. | 0.656 |
gltA | nuoC | GCA_000819825_02552 | GCA_000819825_01209 | Unannotated protein; Belongs to the citrate synthase family. | Unannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family. | 0.907 |
gltA | prpB | GCA_000819825_02552 | GCA_000819825_01324 | Unannotated protein; Belongs to the citrate synthase family. | Unannotated protein; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family. | 0.889 |
icd_1 | GCA_000819825_01326 | GCA_000819825_02825 | GCA_000819825_01326 | Unannotated protein. | Unannotated protein. | 0.872 |
icd_1 | gltA | GCA_000819825_02825 | GCA_000819825_02552 | Unannotated protein. | Unannotated protein; Belongs to the citrate synthase family. | 0.899 |
icd_1 | leuC_1 | GCA_000819825_02825 | GCA_000819825_01327 | Unannotated protein. | Unannotated protein. | 0.899 |
icd_1 | nuoC | GCA_000819825_02825 | GCA_000819825_01209 | Unannotated protein. | Unannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family. | 0.873 |
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