Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000819825_03090 | gcvA_2 | GCA_000819825_03090 | GCA_000819825_03091 | Unannotated protein. | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | 0.793 |
GCA_000819825_03090 | rlmM | GCA_000819825_03090 | GCA_000819825_03088 | Unannotated protein. | Unannotated protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. | 0.729 |
GCA_000819825_03090 | ygdD | GCA_000819825_03090 | GCA_000819825_03089 | Unannotated protein. | Unannotated protein. | 0.729 |
abgR | benM | GCA_000819825_01042 | GCA_000819825_02690 | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | 0.753 |
abgR | cbl_2 | GCA_000819825_01042 | GCA_000819825_01950 | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | 0.679 |
abgR | cysL_1 | GCA_000819825_01042 | GCA_000819825_01482 | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | 0.765 |
abgR | gcvA_2 | GCA_000819825_01042 | GCA_000819825_03091 | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | 0.583 |
abgR | oxyR_1 | GCA_000819825_01042 | GCA_000819825_01559 | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | 0.709 |
abgR | oxyR_2 | GCA_000819825_01042 | GCA_000819825_00066 | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | 0.686 |
benM | abgR | GCA_000819825_02690 | GCA_000819825_01042 | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | 0.753 |
benM | gcvA_2 | GCA_000819825_02690 | GCA_000819825_03091 | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | 0.627 |
cbl_2 | abgR | GCA_000819825_01950 | GCA_000819825_01042 | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | 0.679 |
cbl_2 | cysL_1 | GCA_000819825_01950 | GCA_000819825_01482 | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | 0.626 |
cbl_2 | gcvA_2 | GCA_000819825_01950 | GCA_000819825_03091 | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | 0.567 |
cbl_2 | oxyR_1 | GCA_000819825_01950 | GCA_000819825_01559 | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | 0.538 |
cbl_2 | yofA_2 | GCA_000819825_01950 | GCA_000819825_00207 | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | 0.633 |
cysL_1 | abgR | GCA_000819825_01482 | GCA_000819825_01042 | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | 0.765 |
cysL_1 | cbl_2 | GCA_000819825_01482 | GCA_000819825_01950 | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | 0.626 |
cysL_1 | gcvA_2 | GCA_000819825_01482 | GCA_000819825_03091 | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | 0.559 |
cysL_1 | oxyR_1 | GCA_000819825_01482 | GCA_000819825_01559 | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | Unannotated protein; Belongs to the LysR transcriptional regulatory family. | 0.636 |
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