Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000819825_03404 | chrR | GCA_000819825_03404 | GCA_000819825_03402 | Unannotated protein. | Unannotated protein. | 0.561 |
GCA_000819825_03404 | sigK_1 | GCA_000819825_03404 | GCA_000819825_03403 | Unannotated protein. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.556 |
cheR-3 | sigK_1 | GCA_000819825_03951 | GCA_000819825_03403 | Unannotated protein. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.689 |
cheR-3 | sigK_2 | GCA_000819825_03951 | GCA_000819825_00186 | Unannotated protein. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.689 |
cheR-3 | sigV | GCA_000819825_03951 | GCA_000819825_03899 | Unannotated protein. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.689 |
chrR | GCA_000819825_03404 | GCA_000819825_03402 | GCA_000819825_03404 | Unannotated protein. | Unannotated protein. | 0.561 |
chrR | sigK_1 | GCA_000819825_03402 | GCA_000819825_03403 | Unannotated protein. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.985 |
chrR | sigK_2 | GCA_000819825_03402 | GCA_000819825_00186 | Unannotated protein. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.802 |
chrR | sigV | GCA_000819825_03402 | GCA_000819825_03899 | Unannotated protein. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.787 |
rpoA | rpoB | GCA_000819825_01720 | GCA_000819825_03571 | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
rpoA | rpoC | GCA_000819825_01720 | GCA_000819825_03572 | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
rpoA | rpoZ | GCA_000819825_01720 | GCA_000819825_00279 | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.998 |
rpoA | sigK_1 | GCA_000819825_01720 | GCA_000819825_03403 | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.700 |
rpoA | sigK_2 | GCA_000819825_01720 | GCA_000819825_00186 | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.700 |
rpoA | sigV | GCA_000819825_01720 | GCA_000819825_03899 | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.690 |
rpoB | rpoA | GCA_000819825_03571 | GCA_000819825_01720 | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
rpoB | rpoC | GCA_000819825_03571 | GCA_000819825_03572 | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
rpoB | rpoZ | GCA_000819825_03571 | GCA_000819825_00279 | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.997 |
rpoB | sigK_1 | GCA_000819825_03571 | GCA_000819825_03403 | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.732 |
rpoB | sigK_2 | GCA_000819825_03571 | GCA_000819825_00186 | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.732 |
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