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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygaUPeptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology. (147 aa)    
Predicted Functional Partners:
AKU63446.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.955
AKU62928.1
Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.911
AKU62936.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.868
pilQ
Secretin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.794
AKU63055.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.619
AKU64288.1
Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.530
gspE
Protein transporter HofB; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.497
epsF
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.497
AKU64287.1
Competence protein ComB; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.497
AKU62919.1
Competence protein ComA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.497
Your Current Organism:
Aggregatibacter aphrophilus
NCBI taxonomy Id: 732
Other names: A. aphrophilus, ATCC 29241 [[Haemophilus paraphrophilus]], ATCC 33389, CCUG 3715, CCUG 41355 [[Haemophilus paraphrophilus]], CIP 70.72 [[Haemophilus paraphrophilus]], CIP 70.73, Haemophilus aphrophilus, Haemophilus paraphrophilus, NCTC 10557 [[Haemophilus paraphrophilus]], NCTC 5906
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