Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKU63308.1Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)    
Predicted Functional Partners:
AKU64306.1
Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.947
AKU63305.1
Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.937
wcaJ
UDP-phosphate galactose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.877
AKU63303.1
RfaG protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.864
AKU63298.1
Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.827
AKU63301.1
RfaG protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.766
AKU63302.1
RfbX protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.756
AKU63300.1
RfaG protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.755
AKU63299.1
Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.752
AKU63306.1
Carbamoyl phosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.747
Your Current Organism:
Aggregatibacter aphrophilus
NCBI taxonomy Id: 732
Other names: A. aphrophilus, ATCC 29241 [[Haemophilus paraphrophilus]], ATCC 33389, CCUG 3715, CCUG 41355 [[Haemophilus paraphrophilus]], CIP 70.72 [[Haemophilus paraphrophilus]], CIP 70.73, Haemophilus aphrophilus, Haemophilus paraphrophilus, NCTC 10557 [[Haemophilus paraphrophilus]], NCTC 5906
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