STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKU63973.1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (73 aa)    
Predicted Functional Partners:
AKU63974.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.947
AKU63975.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.947
AKU62656.1
Sulfur transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.813
AKU62432.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.692
iscS_1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
   
 
 0.566
AKU62433.1
Redox protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.505
dgt
Deoxyguanosinetriphosphate triphosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the dGTPase family. Type 2 subfamily.
       0.445
yohK
Deoxyguanosinetriphosphate triphosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.445
yohJ
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.445
AKU63357.1
Sulfate adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.441
Your Current Organism:
Aggregatibacter aphrophilus
NCBI taxonomy Id: 732
Other names: A. aphrophilus, ATCC 29241 [[Haemophilus paraphrophilus]], ATCC 33389, CCUG 3715, CCUG 41355 [[Haemophilus paraphrophilus]], CIP 70.72 [[Haemophilus paraphrophilus]], CIP 70.73, Haemophilus aphrophilus, Haemophilus paraphrophilus, NCTC 10557 [[Haemophilus paraphrophilus]], NCTC 5906
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