STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GX50_05059C2H2-type domain-containing protein. (214 aa)    
Predicted Functional Partners:
GX50_03531
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.
    
 0.884
GX50_02570
RNA helicase.
    
  0.851
GX50_06704
U3 small nucleolar RNA-associated protein 22.
    
 
 0.791
GX50_05085
rRNA biogenesis protein RRP36.
   
   0.789
GX50_01063
U3 small nucleolar RNA-associated protein 6.
    
 
 0.788
GX50_06469
U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.
    
   0.787
GX50_05070
Essential nuclear protein 1.
    
   0.787
GX50_03541
Nucleolar protein 14.
    
   0.787
GX50_02415
U3 small nucleolar RNA-associated protein 3.
    
   0.787
GX50_01866
MI domain-containing protein.
    
   0.787
Your Current Organism:
Emmonsia crescens
NCBI taxonomy Id: 73230
Other names: ATCC 13704, Ajellomyces crescens, CBS 177.60, Chrysosporium parvum var. crescens, E. crescens, Emmonsia parva var. crescens, UAMH 3008
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