STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GX50_01983Ubiquitin carboxyl-terminal hydrolase 16; Belongs to the peptidase C19 family. (633 aa)    
Predicted Functional Partners:
GX50_01475
SAGA-associated factor 73.
    
 0.934
GX50_07086
Transcription initiation factor TFIID subunit 10.
    
 0.932
GX50_01811
Transcription initiation factor TFIID subunit 9B.
    
 0.931
GX50_07613
Transcriptional adapter 3.
    
 0.929
GX50_07261
Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.
    
 0.929
GX50_06946
Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation.
    
 0.926
GX50_02136
Transcription initiation factor TFIID subunit 5.
    
 0.918
GX50_05266
SAGA-associated factor 29.
   
 0.895
GX50_08725
Transcription initiation factor TFIID subunit 12.
    
 0.888
GX50_04960
Transcription initiation factor TFIID subunit 6.
    
 0.882
Your Current Organism:
Emmonsia crescens
NCBI taxonomy Id: 73230
Other names: ATCC 13704, Ajellomyces crescens, CBS 177.60, Chrysosporium parvum var. crescens, E. crescens, Emmonsia parva var. crescens, UAMH 3008
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.