GX50_01521 protein (Emmonsia crescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GX50_01521

Nucleolar pre-ribosomal-associated protein 1. (1130 aa)

Predicted Functional Partners:

GX50_03974

0.955

GX50_08740

0.910

GX50_05942

0.895

GX50_00076

0.891

GX50_03795

0.890

NAT10

0.888

GX50_01440

0.865

GX50_03006

0.852

GX50_08613

0.847

GX50_03659

0.844

Your Current Organism:

Emmonsia crescens

NCBI taxonomy Id: 73230
Other names: ATCC 13704, Ajellomyces crescens, CBS 177.60, Chrysosporium parvum var. crescens, E. crescens, Emmonsia parva var. crescens, UAMH 3008

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GX50_00076	GX50_01440	A0A2B7ZV77	A0A2B7ZSI8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Periodic tryptophan protein 2.	0.915
GX50_00076	GX50_01521	A0A2B7ZV77	A0A2B7ZR52	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Nucleolar pre-ribosomal-associated protein 1.	0.891
GX50_00076	GX50_03006	A0A2B7ZV77	A0A2B7ZMV7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Elongation factor 3.	0.952
GX50_00076	GX50_03659	A0A2B7ZV77	A0A2B7ZK02	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	U3 small nucleolar RNA-associated protein 4.	0.892
GX50_00076	GX50_03795	A0A2B7ZV77	A0A2B7ZKR6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	U3 small nucleolar RNA-associated protein 20.	0.923
GX50_00076	GX50_03974	A0A2B7ZV77	A0A2B7ZJ59	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	rRNA biogenesis protein RRP5.	0.986
GX50_00076	GX50_05942	A0A2B7ZV77	A0A2B7ZER4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	U3 small nucleolar RNA-associated protein 10.	0.932
GX50_00076	GX50_08740	A0A2B7ZV77	A0A2B7Z524	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Urb2 domain-containing protein.	0.703
GX50_00076	NAT10	A0A2B7ZV77	A0A2B7ZCS3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.922
GX50_01440	GX50_00076	A0A2B7ZSI8	A0A2B7ZV77	Periodic tryptophan protein 2.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.915
GX50_01440	GX50_01521	A0A2B7ZSI8	A0A2B7ZR52	Periodic tryptophan protein 2.	Nucleolar pre-ribosomal-associated protein 1.	0.865
GX50_01440	GX50_03006	A0A2B7ZSI8	A0A2B7ZMV7	Periodic tryptophan protein 2.	Elongation factor 3.	0.958
GX50_01440	GX50_03659	A0A2B7ZSI8	A0A2B7ZK02	Periodic tryptophan protein 2.	U3 small nucleolar RNA-associated protein 4.	0.999
GX50_01440	GX50_03795	A0A2B7ZSI8	A0A2B7ZKR6	Periodic tryptophan protein 2.	U3 small nucleolar RNA-associated protein 20.	0.998
GX50_01440	GX50_03974	A0A2B7ZSI8	A0A2B7ZJ59	Periodic tryptophan protein 2.	rRNA biogenesis protein RRP5.	0.998
GX50_01440	GX50_05942	A0A2B7ZSI8	A0A2B7ZER4	Periodic tryptophan protein 2.	U3 small nucleolar RNA-associated protein 10.	0.999
GX50_01440	GX50_08740	A0A2B7ZSI8	A0A2B7Z524	Periodic tryptophan protein 2.	Urb2 domain-containing protein.	0.779
GX50_01440	NAT10	A0A2B7ZSI8	A0A2B7ZCS3	Periodic tryptophan protein 2.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.998
GX50_01521	GX50_00076	A0A2B7ZR52	A0A2B7ZV77	Nucleolar pre-ribosomal-associated protein 1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.891
GX50_01521	GX50_01440	A0A2B7ZR52	A0A2B7ZSI8	Nucleolar pre-ribosomal-associated protein 1.	Periodic tryptophan protein 2.	0.865

page 1 of 5

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About