Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
B0185_03395Transposase; Frameshifted; internal stop; incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family. (160 aa)    
Predicted Functional Partners:
OOR96953.1
Copper-translocating P-type ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.537
raiA
Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.479
OOR96512.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BolA/IbaG family.
   
  
 0.471
rsaL
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.455
LysM
Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.437
msrA
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.413
Your Current Organism:
Haemophilus parahaemolyticus
NCBI taxonomy Id: 735
Other names: ATCC 10014, CCUG 3716, CIP 56.86, DSM 21417, H. parahaemolyticus, NCTC 8479
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