OOR95546.1 protein (Haemophilus parahaemolyticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Haemophilus parahaemolyticus

NCBI taxonomy Id: 735
Other names: ATCC 10014, CCUG 3716, CIP 56.86, DSM 21417, H. parahaemolyticus, NCTC 8479

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NrfB	OOR94480.1	B0185_08690	B0185_09625	Cytochrome c nitrite reductase pentaheme subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.732
NrfB	OOR95545.1	B0185_08690	B0185_07905	Cytochrome c nitrite reductase pentaheme subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	TIGR00156 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
NrfB	OOR95546.1	B0185_08690	B0185_07910	Cytochrome c nitrite reductase pentaheme subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	TIGR00156 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
NrfB	OOR95572.1	B0185_08690	B0185_07995	Cytochrome c nitrite reductase pentaheme subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metalloprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
NrfB	napD	B0185_08690	B0185_09460	Cytochrome c nitrite reductase pentaheme subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Reductase; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.	0.775
OOR94480.1	NrfB	B0185_09625	B0185_08690	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome c nitrite reductase pentaheme subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.732
OOR94480.1	OOR95545.1	B0185_09625	B0185_07905	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TIGR00156 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
OOR94480.1	OOR95546.1	B0185_09625	B0185_07910	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TIGR00156 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.613
OOR94480.1	OOR95572.1	B0185_09625	B0185_07995	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metalloprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.726
OOR94480.1	OOR96754.1	B0185_09625	B0185_05510	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
OOR94480.1	OOR97559.1	B0185_09625	B0185_01775	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage minor tail protein L; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572
OOR94480.1	napD	B0185_09625	B0185_09460	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Reductase; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.	0.674
OOR95545.1	NrfB	B0185_07905	B0185_08690	TIGR00156 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome c nitrite reductase pentaheme subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
OOR95545.1	OOR94480.1	B0185_07905	B0185_09625	TIGR00156 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
OOR95545.1	OOR95546.1	B0185_07905	B0185_07910	TIGR00156 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TIGR00156 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
OOR95545.1	OOR95547.1	B0185_07905	B0185_07915	TIGR00156 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
OOR95545.1	OOR95572.1	B0185_07905	B0185_07995	TIGR00156 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metalloprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
OOR95545.1	OOR96098.1	B0185_07905	B0185_06810	TIGR00156 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.715
OOR95545.1	OOR96754.1	B0185_07905	B0185_05510	TIGR00156 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
OOR95545.1	OOR97559.1	B0185_07905	B0185_01775	TIGR00156 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage minor tail protein L; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571