STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL43786.1Hydrophobic/amphiphilic exporter-1, HAE1 family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1040 aa)    
Predicted Functional Partners:
SHL43826.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.967
SHL99731.1
Outer membrane protein.
 
 0.749
SHL57820.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.722
SHL57847.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.721
SHM69903.1
Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.714
SHN05332.1
Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.694
SHM78842.1
Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.645
SHM35897.1
Membrane fusion protein, multidrug efflux system; Manually curated; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.609
SHM35825.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
 0.592
SHM34213.1
Outer membrane protein, multidrug efflux system.
 
 0.570
Your Current Organism:
Labrenzia suaedae
NCBI taxonomy Id: 735517
Other names: DSM 22153, KACC 13772, L. suaedae, Labrenzia sp. YC6927, Labrenzia suaedae Bibi et al. 2014, strain YC6927
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