STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM41059.1Two-component system, chemotaxis family, response regulator CheY. (121 aa)    
Predicted Functional Partners:
SHM41126.1
Two-component system, chemotaxis family, sensor kinase CheA.
 
 0.999
SHM34260.1
Signal transduction histidine kinase.
 
 0.997
SHL56351.1
Na+/proline symporter.
  
 0.994
SHM46155.1
PAS domain S-box-containing protein.
 
 0.993
SHM88566.1
PAS/PAC sensor hybrid histidine kinase.
 
0.993
SHL63097.1
Multi-sensor signal transduction histidine kinase.
 
 0.981
SHM14865.1
Two-component system, cell cycle sensor histidine kinase and response regulator CckA.
 
 0.981
SHM41093.1
CheW protein.
 
  
 0.978
SHL28783.1
Signal transduction histidine kinase.
 
 0.968
SHL41586.1
PAS domain S-box-containing protein.
 
 0.960
Your Current Organism:
Labrenzia suaedae
NCBI taxonomy Id: 735517
Other names: DSM 22153, KACC 13772, L. suaedae, Labrenzia sp. YC6927, Labrenzia suaedae Bibi et al. 2014, strain YC6927
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