STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM97921.1Hypothetical protein. (331 aa)    
Predicted Functional Partners:
SHM14491.1
Hypothetical protein.
  
     0.597
SHM14458.1
Hypothetical protein.
  
     0.562
SHM14529.1
Hypothetical protein.
  
     0.503
SHM92953.1
Ca-activated chloride channel family protein.
 
     0.501
SHM97896.1
Lytic murein transglycosylase.
       0.479
SHM27156.1
Protein of unknown function.
  
     0.432
SHM64967.1
Predicted lipid carrier protein YhbT, contains SCP2 domain.
  
     0.405
Your Current Organism:
Labrenzia suaedae
NCBI taxonomy Id: 735517
Other names: DSM 22153, KACC 13772, L. suaedae, Labrenzia sp. YC6927, Labrenzia suaedae Bibi et al. 2014, strain YC6927
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.