STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN18317.1Hypothetical protein. (79 aa)    
Predicted Functional Partners:
SHN18291.1
Protein C Serine peptidase. MEROPS family S49.
       0.773
SHN18305.1
Phage portal protein, lambda family.
       0.773
SHN18343.1
Hypothetical protein.
       0.771
SHN18329.1
Phage terminase, large subunit GpA.
       0.762
SHN18279.1
Hypothetical protein.
       0.697
SHN18268.1
Bacteriophage lambda head decoration protein D.
       0.495
SHN18255.1
Phage major capsid protein E.
       0.400
Your Current Organism:
Labrenzia suaedae
NCBI taxonomy Id: 735517
Other names: DSM 22153, KACC 13772, L. suaedae, Labrenzia sp. YC6927, Labrenzia suaedae Bibi et al. 2014, strain YC6927
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.