rarD-2 protein (Haemophilus paraphrohaemolyticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rarD-2

EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)

Predicted Functional Partners:

OOR94521.1

0.811

rarD

0.783

kdkA

0.492

OOR94518.1

0.470

Your Current Organism:

Haemophilus paraphrohaemolyticus

NCBI taxonomy Id: 736
Other names: ATCC 29237, CCUG 3718, CIP 102512, DSM 21451, H. paraphrohaemolyticus, NCTC 10670

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OOR94518.1	OOR94521.1	B0184_05770	B0184_05785	Aminotransferase; Broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
OOR94518.1	rarD	B0184_05770	B0184_05775	Aminotransferase; Broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
OOR94518.1	rarD-2	B0184_05770	B0184_05780	Aminotransferase; Broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
OOR94521.1	OOR94518.1	B0184_05785	B0184_05770	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; Broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
OOR94521.1	kdkA	B0184_05785	B0184_05790	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.	0.492
OOR94521.1	rarD	B0184_05785	B0184_05775	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.810
OOR94521.1	rarD-2	B0184_05785	B0184_05780	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
kdkA	OOR94521.1	B0184_05790	B0184_05785	3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
kdkA	rarD	B0184_05790	B0184_05775	3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
kdkA	rarD-2	B0184_05790	B0184_05780	3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
rarD	OOR94518.1	B0184_05775	B0184_05770	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; Broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
rarD	OOR94521.1	B0184_05775	B0184_05785	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.810
rarD	kdkA	B0184_05775	B0184_05790	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.	0.492
rarD	rarD-2	B0184_05775	B0184_05780	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
rarD-2	OOR94518.1	B0184_05780	B0184_05770	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; Broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
rarD-2	OOR94521.1	B0184_05780	B0184_05785	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
rarD-2	kdkA	B0184_05780	B0184_05790	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.	0.492
rarD-2	rarD	B0184_05780	B0184_05775	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	EamA family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783

Server load: medium (48%) [HD]

Permalink

Network

Neighborhood

Textmining

Co-occurrence

Experiments

Fusion

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About