OOR93537.1 protein (Haemophilus paraphrohaemolyticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Haemophilus paraphrohaemolyticus

NCBI taxonomy Id: 736
Other names: ATCC 29237, CCUG 3718, CIP 102512, DSM 21451, H. paraphrohaemolyticus, NCTC 10670

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OOR93536.1	OOR93537.1	B0184_09555	B0184_09560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
OOR93536.1	OOR93538.1	B0184_09555	B0184_09565	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.862
OOR93536.1	OOR93539.1	B0184_09555	B0184_09570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.864
OOR93536.1	OOR93540.1	B0184_09555	B0184_09575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
OOR93536.1	OOR93541.1	B0184_09555	B0184_09580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
OOR93536.1	OOR93542.1	B0184_09555	B0184_09585	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
OOR93536.1	OOR93544.1	B0184_09555	B0184_09595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
OOR93536.1	OOR93545.1	B0184_09555	B0184_09600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.645
OOR93536.1	OOR93549.1	B0184_09555	B0184_09620	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage major tail tube protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
OOR93536.1	OOR93550.1	B0184_09555	B0184_09625	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
OOR93537.1	OOR93536.1	B0184_09560	B0184_09555	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
OOR93537.1	OOR93538.1	B0184_09560	B0184_09565	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
OOR93537.1	OOR93539.1	B0184_09560	B0184_09570	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
OOR93537.1	OOR93540.1	B0184_09560	B0184_09575	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
OOR93537.1	OOR93541.1	B0184_09560	B0184_09580	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
OOR93537.1	OOR93542.1	B0184_09560	B0184_09585	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
OOR93537.1	OOR93544.1	B0184_09560	B0184_09595	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
OOR93537.1	OOR93545.1	B0184_09560	B0184_09600	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
OOR93537.1	OOR93549.1	B0184_09560	B0184_09620	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage major tail tube protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
OOR93537.1	OOR93550.1	B0184_09560	B0184_09625	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926