STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FF38_11849Heterogeneous nuclear ribonucleoprotein A1. (393 aa)    
Predicted Functional Partners:
FF38_00667
RNA-binding protein Rsf1.
  
0.947
FF38_07866
Heterogeneous nuclear ribonucleoprotein 87F.
  
  
 
0.902
FF38_07089
RRM domain-containing protein.
  
 0.796
FF38_05385
RNA-binding protein 1.
  
 0.738
FF38_09886
RRM domain-containing protein.
  
 0.709
FF38_12765
Uncharacterized protein.
   
 0.697
FF38_13117
Uncharacterized protein.
   
 0.682
FF38_04378
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...]
  
 
 0.673
FF38_13070
Uncharacterized protein.
  
0.672
FF38_12950
RRM domain-containing protein.
  
 0.664
Your Current Organism:
Lucilia cuprina
NCBI taxonomy Id: 7375
Other names: Australian sheep blowfly, L. cuprina, greenbottle fly
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