FF38_08930 protein (Lucilia cuprina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FF38_08930

Uncharacterized protein. (497 aa)

Predicted Functional Partners:

FF38_02307

0.927

FF38_08605

0.778

FF38_03844

0.724

FF38_05844

0.678

FF38_14275

0.677

FF38_11345

0.676

FF38_08423

0.676

FF38_11718

0.575

FF38_03542

0.550

FF38_02115

0.539

Your Current Organism:

Lucilia cuprina

NCBI taxonomy Id: 7375
Other names: Australian sheep blowfly, L. cuprina, greenbottle fly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FF38_02115	FF38_05844	A0A0L0C822	A0A0L0CMJ6	Uncharacterized protein.	PX domain-containing protein.	0.555
FF38_02115	FF38_08423	A0A0L0C822	A0A0L0CGE8	Uncharacterized protein.	PX domain-containing protein.	0.544
FF38_02115	FF38_08930	A0A0L0C822	A0A0L0C433	Uncharacterized protein.	Uncharacterized protein.	0.539
FF38_02115	FF38_11345	A0A0L0C822	A0A0L0C610	Uncharacterized protein.	PX domain-containing protein.	0.523
FF38_02307	FF38_03542	A0A0L0C435	A0A0L0C7N6	Vacuolar protein sorting-associated protein 26.	Putative WASH complex subunit FAM21.	0.572
FF38_02307	FF38_03844	A0A0L0C435	A0A0L0CMU0	Vacuolar protein sorting-associated protein 26.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.995
FF38_02307	FF38_05844	A0A0L0C435	A0A0L0CMJ6	Vacuolar protein sorting-associated protein 26.	PX domain-containing protein.	0.950
FF38_02307	FF38_08423	A0A0L0C435	A0A0L0CGE8	Vacuolar protein sorting-associated protein 26.	PX domain-containing protein.	0.981
FF38_02307	FF38_08930	A0A0L0C435	A0A0L0C433	Vacuolar protein sorting-associated protein 26.	Uncharacterized protein.	0.927
FF38_02307	FF38_11345	A0A0L0C435	A0A0L0C610	Vacuolar protein sorting-associated protein 26.	PX domain-containing protein.	0.687
FF38_02307	FF38_11718	A0A0L0C435	A0A0L0CEH1	Vacuolar protein sorting-associated protein 26.	Rab-GAP TBC domain-containing protein.	0.801
FF38_02307	FF38_14275	A0A0L0C435	A0A0L0CFI3	Vacuolar protein sorting-associated protein 26.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.990
FF38_03542	FF38_02307	A0A0L0C7N6	A0A0L0C435	Putative WASH complex subunit FAM21.	Vacuolar protein sorting-associated protein 26.	0.572
FF38_03542	FF38_03844	A0A0L0C7N6	A0A0L0CMU0	Putative WASH complex subunit FAM21.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.728
FF38_03542	FF38_05844	A0A0L0C7N6	A0A0L0CMJ6	Putative WASH complex subunit FAM21.	PX domain-containing protein.	0.541
FF38_03542	FF38_08423	A0A0L0C7N6	A0A0L0CGE8	Putative WASH complex subunit FAM21.	PX domain-containing protein.	0.428
FF38_03542	FF38_08605	A0A0L0C7N6	A0A0L0C2L6	Putative WASH complex subunit FAM21.	VWFA domain-containing protein.	0.414
FF38_03542	FF38_08930	A0A0L0C7N6	A0A0L0C433	Putative WASH complex subunit FAM21.	Uncharacterized protein.	0.550
FF38_03542	FF38_11718	A0A0L0C7N6	A0A0L0CEH1	Putative WASH complex subunit FAM21.	Rab-GAP TBC domain-containing protein.	0.485
FF38_03542	FF38_14275	A0A0L0C7N6	A0A0L0CFI3	Putative WASH complex subunit FAM21.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.640