Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
E6KZQ8_9PAST | YfbV | GCA_001059425_01018 | GCA_001059425_01223 | Unannotated protein. | Unannotated protein. | 0.647 |
E6KZQ8_9PAST | vanY | GCA_001059425_01018 | GCA_001059425_01356 | Unannotated protein. | Unannotated protein. | 0.425 |
E6KZQ8_9PAST | yihI | GCA_001059425_01018 | GCA_001059425_00802 | Unannotated protein. | Unannotated protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family. | 0.528 |
YfbV | E6KZQ8_9PAST | GCA_001059425_01223 | GCA_001059425_01018 | Unannotated protein. | Unannotated protein. | 0.647 |
YfbV | vanY | GCA_001059425_01223 | GCA_001059425_01356 | Unannotated protein. | Unannotated protein. | 0.542 |
YfbV | yihI | GCA_001059425_01223 | GCA_001059425_00802 | Unannotated protein. | Unannotated protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family. | 0.774 |
dapE | nudF | GCA_001059425_01357 | GCA_001059425_01355 | Unannotated protein; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | Unannotated protein. | 0.438 |
dapE | oprC | GCA_001059425_01357 | GCA_001059425_01358 | Unannotated protein; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | Unannotated protein. | 0.500 |
dapE | vanY | GCA_001059425_01357 | GCA_001059425_01356 | Unannotated protein; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | Unannotated protein. | 0.788 |
nudF | dapE | GCA_001059425_01355 | GCA_001059425_01357 | Unannotated protein. | Unannotated protein; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.438 |
nudF | vanY | GCA_001059425_01355 | GCA_001059425_01356 | Unannotated protein. | Unannotated protein. | 0.423 |
oprC | dapE | GCA_001059425_01358 | GCA_001059425_01357 | Unannotated protein. | Unannotated protein; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.500 |
oprC | vanY | GCA_001059425_01358 | GCA_001059425_01356 | Unannotated protein. | Unannotated protein. | 0.500 |
vanY | E6KZQ8_9PAST | GCA_001059425_01356 | GCA_001059425_01018 | Unannotated protein. | Unannotated protein. | 0.425 |
vanY | YfbV | GCA_001059425_01356 | GCA_001059425_01223 | Unannotated protein. | Unannotated protein. | 0.542 |
vanY | dapE | GCA_001059425_01356 | GCA_001059425_01357 | Unannotated protein. | Unannotated protein; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.788 |
vanY | nudF | GCA_001059425_01356 | GCA_001059425_01355 | Unannotated protein. | Unannotated protein. | 0.423 |
vanY | oprC | GCA_001059425_01356 | GCA_001059425_01358 | Unannotated protein. | Unannotated protein. | 0.500 |
vanY | yihI | GCA_001059425_01356 | GCA_001059425_00802 | Unannotated protein. | Unannotated protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family. | 0.466 |
yihI | E6KZQ8_9PAST | GCA_001059425_00802 | GCA_001059425_01018 | Unannotated protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family. | Unannotated protein. | 0.528 |
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