STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC60228.1Hypothetical protein. (141 aa)    
Predicted Functional Partners:
SFC60202.1
Cysteine desulfuration protein SufE.
       0.778
SFC60251.1
Cysteine desulfurase /L-selenocysteine selenide-lyase (L-alanine-forming); Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.754
SFC62043.1
Hypothetical protein.
  
     0.635
SFD40816.1
Pyridine nucleotide-disulphide oxidoreductase.
  
     0.621
SFD10503.1
Peptidogalycan biosysnthesis/recognition.
  
     0.618
SFD49325.1
Hypothetical protein.
  
     0.583
SFC53897.1
Hypothetical protein.
  
     0.582
SFD82037.1
Hypothetical protein.
  
     0.580
SFD10570.1
Hypothetical protein.
  
     0.571
SFD75415.1
Hypothetical protein.
  
     0.564
Your Current Organism:
Flavobacterium phragmitis
NCBI taxonomy Id: 739143
Other names: CGMCC 1.10370, DSM 23314, F. phragmitis, Flavobacterium phragmitis Liu et al. 2011, Flavobacterium sp. BLN2, strain BLN2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.