STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD01748.1DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains. (393 aa)    
Predicted Functional Partners:
SFC52552.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
  0.957
SFD98461.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.938
SFD98504.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.937
SFD78546.1
Hypothetical protein.
  
0.933
SFC73855.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 
 0.914
SFC93030.1
PAS domain S-box-containing protein.
 
 0.887
SFD46822.1
Hpt domain-containing protein.
 
0.886
SFD99201.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
0.886
SFD98272.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
  
0.865
SFD39534.1
RNA polymerase, sigma 54 subunit, RpoN/SigL.
 
  
 0.822
Your Current Organism:
Flavobacterium phragmitis
NCBI taxonomy Id: 739143
Other names: CGMCC 1.10370, DSM 23314, F. phragmitis, Flavobacterium phragmitis Liu et al. 2011, Flavobacterium sp. BLN2, strain BLN2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.