STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD37511.1Ig-like domain-containing protein. (562 aa)    
Predicted Functional Partners:
SFD28184.1
Surface antigen.
  
     0.766
SFD70119.1
Tetratricopeptide repeat-containing protein.
  
     0.762
SFD16614.1
Family of unknown function.
  
     0.755
SFD36144.1
Hypothetical protein.
  
     0.753
SFD24846.1
Protein of unknown function.
  
     0.749
rimP
Ribosome maturation factor RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
  
     0.728
SFC98412.1
pRiA4b ORF-3-like protein.
  
     0.720
SFE03614.1
Protein of unknown function.
  
     0.710
SFD11899.1
Putative porin.
  
     0.707
SFD16765.1
LPS assembly outer membrane protein LptD (organic solvent tolerance protein OstA).
  
     0.704
Your Current Organism:
Flavobacterium phragmitis
NCBI taxonomy Id: 739143
Other names: CGMCC 1.10370, DSM 23314, F. phragmitis, Flavobacterium phragmitis Liu et al. 2011, Flavobacterium sp. BLN2, strain BLN2
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