STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD79780.1Aspartate ammonia-lyase. (469 aa)    
Predicted Functional Partners:
SFC62587.1
L-asparaginase.
 
 
 0.964
pckA
Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
   
 
 0.936
SFE02123.1
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
 
   
 0.901
SFC51058.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.893
SFD27577.1
Aspartate kinase.
    
 0.885
SFD27596.1
Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family.
    
 0.885
argH
Argininosuccinate lyase.
     
0.884
SFD08369.1
Aspartate aminotransferase.
     
 0.879
SFD62769.1
Aspartate aminotransferase.
     
 0.879
SFD01148.1
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
 0.878
Your Current Organism:
Flavobacterium phragmitis
NCBI taxonomy Id: 739143
Other names: CGMCC 1.10370, DSM 23314, F. phragmitis, Flavobacterium phragmitis Liu et al. 2011, Flavobacterium sp. BLN2, strain BLN2
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