STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykfCCell wall-associated hydrolase, NlpC family. (249 aa)    
Predicted Functional Partners:
pepA_1
Leucyl aminopeptidase; Belongs to the peptidase M17 family.
       0.844
gbh
Guanidinopropionase; Belongs to the arginase family.
       0.773
SEN42996.1
Protein of unknown function.
  
     0.720
SEM47250.1
Hypothetical protein.
       0.705
SEL97917.1
NifU homolog involved in Fe-S cluster formation.
  
   
 0.624
SEL97683.1
Protein of unknown function.
  
     0.594
atpE
ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
     0.561
SEM69943.1
GcrA cell cycle regulator.
  
     0.561
hspQ
Heat shock protein HspQ.
  
     0.554
SEM90582.1
Protein of unknown function.
  
     0.554
Your Current Organism:
Roseovarius tolerans
NCBI taxonomy Id: 74031
Other names: CIP 106398, DSM 11457, IFO 16695, JCM 21346, NBRC 16695, R. tolerans, strain EL-172
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.