STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM49405.1Transglutaminase-like superfamily protein. (287 aa)    
Predicted Functional Partners:
SEM49438.1
Hypothetical protein.
       0.773
SEM49472.1
Transcriptional regulator, ArsR family.
       0.639
SEM49336.1
Uncharacterized conserved protein, Alpha-E superfamily.
  
  
 0.568
SEM49369.1
Uncharacterized conserved protein, circularly permuted ATPgrasp superfamily.
  
  
 0.559
SEM49506.1
Hypothetical protein.
       0.514
SEM49535.1
Protein of unknown function.
       0.514
yciC
GTPase, G3E family.
       0.514
prcB
Putative proteasome-type protease.
  
    0.513
SEM49298.1
Transglutaminase-like enzyme, putative cysteine protease.
       0.448
Your Current Organism:
Roseovarius tolerans
NCBI taxonomy Id: 74031
Other names: CIP 106398, DSM 11457, IFO 16695, JCM 21346, NBRC 16695, R. tolerans, strain EL-172
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.