STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM60156.1Rod shape-determining protein MreD. (179 aa)    
Predicted Functional Partners:
spoVD
Peptidoglycan glycosyltransferase.
 
    0.935
ghrA
Glyoxylate/hydroxypyruvate reductase A.
       0.844
mrdB
Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
       0.844
mreC
Rod shape-determining protein MreC.
       0.844
mreB
Rod shape-determining protein MreB.
       0.776
SEM89968.1
Hypothetical protein.
  
     0.753
SEN38604.1
Hypothetical protein.
  
    0.718
SEM35207.1
Hypothetical protein.
  
     0.685
SEM99490.1
Hypothetical protein.
  
     0.660
SEN24709.1
Rhomboid family protein.
  
     0.658
Your Current Organism:
Roseovarius tolerans
NCBI taxonomy Id: 74031
Other names: CIP 106398, DSM 11457, IFO 16695, JCM 21346, NBRC 16695, R. tolerans, strain EL-172
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.