STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM70829.1TIGR02300 family protein. (108 aa)    
Predicted Functional Partners:
SEN11502.1
Hypothetical protein.
  
    0.708
SEM70788.1
Hypothetical protein.
       0.695
dnaJ_1
DnaJ domain-containing protein.
  
     0.668
atpI
ATP synthase protein I; A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex.
  
     0.647
SEM79372.1
Cell division protein FtsB.
  
     0.524
SEM96394.1
Hypothetical protein.
  
     0.512
amhT
Transporter, CPA2 family.
       0.480
mcbR_3
Transcriptional regulator, GntR family.
       0.480
SEN21050.1
Transcriptional regulator, MarR family.
  
     0.469
SEM10818.1
Sec-independent protein translocase protein TatA.
  
     0.446
Your Current Organism:
Roseovarius tolerans
NCBI taxonomy Id: 74031
Other names: CIP 106398, DSM 11457, IFO 16695, JCM 21346, NBRC 16695, R. tolerans, strain EL-172
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.