STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gsiD_1Peptide/nickel transport system permease protein. (310 aa)    
Predicted Functional Partners:
oppD_1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.996
appA_1
Peptide/nickel transport system substrate-binding protein.
  0.994
gsiA_1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  0.991
oppF_1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  0.987
gsiA_2
Microcin C transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.986
gsiC_1
Peptide/nickel transport system permease protein.
 
 0.985
gsiA_5
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  0.985
gsiA_3
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  0.973
gsiA_4
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  0.971
gsiC_2
Peptide/nickel transport system permease protein.
 
 0.966
Your Current Organism:
Roseovarius tolerans
NCBI taxonomy Id: 74031
Other names: CIP 106398, DSM 11457, IFO 16695, JCM 21346, NBRC 16695, R. tolerans, strain EL-172
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.