STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM78892.1TadE-like protein. (178 aa)    
Predicted Functional Partners:
SEM78857.1
Hypothetical protein.
 
    0.971
SEM78931.1
Von Willebrand factor type A domain-containing protein.
 
    0.953
SEN42103.1
Pilus assembly protein CpaB.
 
  
 0.937
SEN41974.1
Pilus assembly protein CpaE.
 
  
 0.935
SEN41886.1
Tight adherence protein B.
 
  
 0.913
SEN42154.1
Flp pilus assembly protein, pilin Flp.
 
  
 0.807
pulD
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.805
SEN41847.1
Tight adherence protein C.
 
    0.725
SEM33268.1
Sporulation related domain-containing protein.
 
     0.723
SEN41694.1
Prepilin peptidase CpaA.
 
  
 0.716
Your Current Organism:
Roseovarius tolerans
NCBI taxonomy Id: 74031
Other names: CIP 106398, DSM 11457, IFO 16695, JCM 21346, NBRC 16695, R. tolerans, strain EL-172
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.