STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oxyR_3Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (304 aa)    
Predicted Functional Partners:
SEN26869.1
Transcriptional regulator, LysR family.
  
     0.738
oxyR_4
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.727
SEN65945.1
Transcriptional regulator, LysR family.
  
     0.715
yjiE_1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.695
dmlR_1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.692
alkJ_1
Choline dehydrogenase.
       0.610
gcvA_3
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.581
dmlR_2
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.570
gcvA_2
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.546
gltC
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.538
Your Current Organism:
Roseovarius tolerans
NCBI taxonomy Id: 74031
Other names: CIP 106398, DSM 11457, IFO 16695, JCM 21346, NBRC 16695, R. tolerans, strain EL-172
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.