STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN21301.1ABC-type nickel/cobalt efflux system, permease component RcnA; Belongs to the NiCoT transporter (TC 2.A.52) family. (298 aa)    
Predicted Functional Partners:
SEN21339.1
ABC-type uncharacterized transport system, substrate-binding protein.
 
     0.963
mdtK
Multidrug resistance protein, MATE family.
       0.618
SEN21387.1
Polyphosphate kinase 2, PA0141 family.
       0.568
SEM64126.1
Transglycosylase SLT domain-containing protein.
  
     0.473
SEM09697.1
Hypothetical protein.
  
     0.427
SEM21159.1
Glutathione-dependent formaldehyde-activating enzyme.
  
     0.408
SEM98432.1
Extensin-like protein C-terminus.
  
     0.404
Your Current Organism:
Roseovarius tolerans
NCBI taxonomy Id: 74031
Other names: CIP 106398, DSM 11457, IFO 16695, JCM 21346, NBRC 16695, R. tolerans, strain EL-172
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.