Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
UYA_02495Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)    
Predicted Functional Partners:
UYA_02500
Pilus assembly protein PilN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
UYA_02505
Pilus assembly protein PilP; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.995
UYA_02515
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.983
UYA_08485
Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.906
UYA_22115
Type IV pili twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.890
UYA_04705
Pilus assembly protein PilE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.888
UYA_22120
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.878
UYA_00220
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.876
UYA_03775
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.874
UYA_04710
Pilus assembly protein PilY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.847
Your Current Organism:
Pseudomonas alcaliphila
NCBI taxonomy Id: 741155
Other names: P. alcaliphila JAB1, Pseudomonas alcaliphila JAB1, Pseudomonas alcaliphila str. JAB1, Pseudomonas alcaliphila strain JAB1, Pseudomonas sp. JAB1
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