STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UYA_03080Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)    
Predicted Functional Partners:
UYA_03090
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.921
UYA_03075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.749
UYA_09545
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.715
UYA_03095
Aspartyl beta-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.688
UYA_03100
Aspartyl beta-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.681
UYA_03085
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.671
UYA_03070
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.616
UYA_03105
Peptidase M50; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.604
UYA_03110
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.594
UYA_12870
Lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.593
Your Current Organism:
Pseudomonas alcaliphila
NCBI taxonomy Id: 741155
Other names: P. alcaliphila JAB1, Pseudomonas alcaliphila JAB1, Pseudomonas alcaliphila str. JAB1, Pseudomonas alcaliphila strain JAB1, Pseudomonas sp. JAB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.