Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UYA_03090Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)    
Predicted Functional Partners:
UYA_03080
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.926
UYA_03085
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.825
UYA_03105
Peptidase M50; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.778
UYA_03110
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.774
UYA_03100
Aspartyl beta-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.707
UYA_03095
Aspartyl beta-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.706
UYA_03115
Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
    0.618
UYA_03075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.597
UYA_03070
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.500
Your Current Organism:
Pseudomonas alcaliphila
NCBI taxonomy Id: 741155
Other names: P. alcaliphila JAB1, Pseudomonas alcaliphila JAB1, Pseudomonas alcaliphila str. JAB1, Pseudomonas alcaliphila strain JAB1, Pseudomonas sp. JAB1
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