STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UYA_03095Aspartyl beta-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)    
Predicted Functional Partners:
UYA_03100
Aspartyl beta-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.954
UYA_03105
Peptidase M50; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.833
UYA_03110
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.827
UYA_03115
Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.796
UYA_03090
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.698
UYA_03080
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.688
UYA_03800
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.648
UYA_09075
Transcriptional antiterminator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.576
UYA_03795
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.570
UYA_03075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.527
Your Current Organism:
Pseudomonas alcaliphila
NCBI taxonomy Id: 741155
Other names: P. alcaliphila JAB1, Pseudomonas alcaliphila JAB1, Pseudomonas alcaliphila str. JAB1, Pseudomonas alcaliphila strain JAB1, Pseudomonas sp. JAB1
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.