STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UYA_04005Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)    
Predicted Functional Partners:
UYA_04000
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.779
UYA_04010
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.767
UYA_04020
Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.744
UYA_22650
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.744
UYA_04015
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.728
UYA_00380
Type VI secretion system ImpA domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.603
UYA_03995
Cu(I)-responsive transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.592
UYA_04795
Sterol desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.566
UYA_22845
Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.566
UYA_21395
Conjugal transfer protein TraX; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.541
Your Current Organism:
Pseudomonas alcaliphila
NCBI taxonomy Id: 741155
Other names: P. alcaliphila JAB1, Pseudomonas alcaliphila JAB1, Pseudomonas alcaliphila str. JAB1, Pseudomonas alcaliphila strain JAB1, Pseudomonas sp. JAB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.