STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UYA_04565RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa)    
Predicted Functional Partners:
UYA_17415
H-NS histone; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.763
UYA_04870
Alginate biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.750
UYA_22605
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.745
UYA_04860
poly(beta-D-mannuronate) C5 epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.738
UYA_08800
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.729
UYA_07605
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.722
UYA_21805
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.695
UYA_05735
Peptidase inhibitor I42; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.676
UYA_06250
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.654
UYA_11205
GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.648
Your Current Organism:
Pseudomonas alcaliphila
NCBI taxonomy Id: 741155
Other names: P. alcaliphila JAB1, Pseudomonas alcaliphila JAB1, Pseudomonas alcaliphila str. JAB1, Pseudomonas alcaliphila strain JAB1, Pseudomonas sp. JAB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.