Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UYA_04865Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (479 aa)    
Predicted Functional Partners:
algL
poly(beta-D-mannuronate) lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism; Belongs to the polysaccharide lyase 5 family.
  
  
 0.988
UYA_04855
Alginate O-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.988
UYA_04870
Alginate biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.988
UYA_04880
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.981
UYA_04845
poly(beta-D-mannuronate) O-acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane-bound acyltransferase family.
  
  
 0.960
UYA_04835
Alginate O-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.932
UYA_04840
Alginate O-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.888
UYA_04875
Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.849
UYA_15370
poly(beta-D-mannuronate) lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.840
UYA_15355
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.811
Your Current Organism:
Pseudomonas alcaliphila
NCBI taxonomy Id: 741155
Other names: P. alcaliphila JAB1, Pseudomonas alcaliphila JAB1, Pseudomonas alcaliphila str. JAB1, Pseudomonas alcaliphila strain JAB1, Pseudomonas sp. JAB1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.