STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UYA_05855Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (432 aa)    
Predicted Functional Partners:
UYA_05850
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.925
UYA_02780
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.727
UYA_14230
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.690
UYA_18495
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.674
UYA_23165
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.672
UYA_04305
Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.634
UYA_06250
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.620
UYA_12165
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.586
UYA_05845
Quercetin 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pirin family.
       0.585
UYA_07635
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.580
Your Current Organism:
Pseudomonas alcaliphila
NCBI taxonomy Id: 741155
Other names: P. alcaliphila JAB1, Pseudomonas alcaliphila JAB1, Pseudomonas alcaliphila str. JAB1, Pseudomonas alcaliphila strain JAB1, Pseudomonas sp. JAB1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.