Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UYA_06360Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)    
Predicted Functional Partners:
UYA_14175
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.754
UYA_19685
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.738
UYA_06365
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.545
UYA_15155
Flagellar basal body rod protein FlgC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.
   
 
 0.505
UYA_04855
Alginate O-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.455
UYA_15365
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.455
UYA_21625
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.438
Your Current Organism:
Pseudomonas alcaliphila
NCBI taxonomy Id: 741155
Other names: P. alcaliphila JAB1, Pseudomonas alcaliphila JAB1, Pseudomonas alcaliphila str. JAB1, Pseudomonas alcaliphila strain JAB1, Pseudomonas sp. JAB1
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