Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
UYA_09155Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (94 aa)    
Predicted Functional Partners:
UYA_09150
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.994
UYA_01845
Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.690
UYA_22725
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.582
UYA_06250
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.578
UYA_11535
Addiction module antidote protein, HigA family; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.568
UYA_05990
DNA starvation/stationary phase protection protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family.
   
    0.514
UYA_02015
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.511
UYA_06245
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.483
UYA_11540
Killer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.433
UYA_15885
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.428
Your Current Organism:
Pseudomonas alcaliphila
NCBI taxonomy Id: 741155
Other names: P. alcaliphila JAB1, Pseudomonas alcaliphila JAB1, Pseudomonas alcaliphila str. JAB1, Pseudomonas alcaliphila strain JAB1, Pseudomonas sp. JAB1
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